Sorry for the delay, Dave. I forgot to check to see if there were any responses to my post.....
Here is what I tried to explain, but with little success: It is the cam that determines if the piston is at TDC for compression or exhaust. If not for the cam the valves are always closed and the crank doesn't know the difference from one revolution to the next. Put the crank timing mark in the 'up' position and align the cam timing mark with it and the valves will be in only one possible position (and I don't know if it is compression or exhaust). Only by turning the cam through 180 degrees will you be able to reverse the valve position, and if you do that your timing will be 180 degrees off (you can't get it to be 360 degrees off, by the way.--I just threw that in. Nobody indicated otherwise).
As far as the statement I made "how do I know this?" It is a mistake I made many years ago with my previous 100. I wish the misalignment had been as obvious to me when I made it as when I had to open it again to verify the problem!