That is common and not really a problem. The center to center distance will still be correct, assuming the rods are not bent or otherwise damaged. The tooling that aligns the piston pin hole occasionally reads the flash or slight rod twist, and then compensates with a hole that is slightly off center. Frequently the hole will be centered on one side, but off on the other.
When I used to build high performance engines I would go through many rods to find enough to use that were closely centered. On a street engine it will not be a problem. One old head put it to me this way, "Once the piston is at the top, a rubber band will pull it back down"! That's a little exaggerated, but his point was that most of the load on the rod is compression. At the top, even on the exhaust to intake stroke, the air being pumped makes the tension load on the rod very small. Only at racing RPM will the centering be a concern. Power doesn't really change the tension on the rods, but increased RPM will. So stock RPM should not overload even a slightly off-centered rod.
I would frequently find stock rods that had cracks almost completely across one of the pin sides on some of the rods that were severely off center. I realized they were likely running like that for a very, very long time.