For a TR3, I'd say 1/4 NF is probably the most common, closely followed by 5/16 NF; but I haven't really tried to catalog them. Not too many of the larger sizes, at least not in standard nuts. Fair number of 3/8 NF Nyloc and castellated though, on the front & rear suspension; plus some 7/16 NF Nyloc and castellated.
The torque tables are useful; but don't list all the bolts/nuts.
MMC changes their part numbers from time to time, so I've never saved them. What's really frustrating is that what they carry also changes from time to time ... I bought a box of hardened flat washers that were almost the perfect size to use under cylinder head nuts (at a time when the big 3 didn't have them), but when I tried to buy a second box for friend, MMC didn't have them any more.