Go for the single 12v... Even most "originality" purists agree it's acceptable, since this gives us far more reliable starting power.
I've seen the 12vs on either side. I've heard people say you should put it on the passenger side, to help balance out the weight of the car, since most of us drive solo . . . and to make the battery more accessible from the driver's seat.
Mine's on the driver's side, however. Don't know why. Probably because that's where the least rusted battery box was at the time of conversion!
Now I've got the neat plastic battery bins in both sides anyway. The empty one is a perfect place to stow the jumper cables, just in case!