There was another significant change, at approximately TS50K. A bulge was added to the bellhousing, to accomodate the later starter drive. The dipstick was deleted, and a fill plug added to the side.
There were also some minor internal changes I believe, but I don't recall the details offhand. I vaguely recall some of the bearings were changed, and maybe the washer that goes against the circlip on the mainshaft. Few other minor details, like early top covers were always drilled and tapped for both the OD switches and a reverse light switch, while later ones were not drilled unless required. (Not all of these changes happened right at TS50K either.) I've got the details at home, so let me know if this is what you want.
But the starter bulge is the big deal, because you can't use a later starter with an early transmission. (Although the aftermarket gear drive starter will fit, so that is one alternative.)
PS, synchromesh on 1st gear didn't come in until the TR4 and TR3B. (Don't recall offhand if the first run of TR3B had it or not, but the second run definitely did.)