Your intake valves are noticeably recessed into the head. It is not enough that I would worry about it for a street motor, but I would plan to have seats put in for the next valve job.
Tom discussed the proper way to install valves. As the valve becomes recessed farther into the head, the stem is higher on the other side. The optimum is to measure the desired valve pressure with the valve closed, and then measure what height makes the desired pressure for each spring. You then shim the bottom of the springs individually, so they all have the same resting pressure on the valves. Again, this is optimum...and extremely important for high revving engines where one valve with low seat pressure could float at high RPM and contact the piston. The TR engine is a "non interference" engine, so the valves will never contact the pistons unless the valves break. So, On an average street engine you do not necessarily have to worry about seat pressures if you have no plans to press the upper RPM range.
In finishing...your situation is not perfect, but it is also more common than not on an older street engine rebuild. The work mentioned is above and beyond what the average machine shop will do. If you want seats and shims...you will have to specify that and pay for it. A machinist will normally only recommend either when the head is worn beyond a reasonable amount. Yours is not.
As long as you can adjust the valve clearance with the adjusters...run it as it is.